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PhyloTree.org -
mtDNA tree Build 17 (18 Feb 2016): subtree L3 |
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Citation: van Oven M, Kayser M.
2009. Updated comprehensive phylogenetic tree of global human mitochondrial
DNA variation. Hum Mutat 30(2):E386-E394. |
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Nucleotide position numbers are consistent
with both the rCRS and the RSRS reference sequences. |
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Mutations are given in forward evolutionary
time direction in the format [ancestral base][position number][derived base],
e.g. "G15043A". |
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In case of a transversion, the derived allele
is shown in lowercase instead of uppercase, e.g. "C5178a". |
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Insertions are indicated by the position
number preceding the insertion followed by a dot (.), the relative insert
position, and the inserted base(s), e.g. "2156.1A". |
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Deletions are indicated by the letter
"d" following the (range of) position number(s) involved, e.g.
"A249d" or "8281-8289d". |
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Mutations that are reversions to an ancestral
state (back mutations) are indicated with an exclamation mark (!), two
exclamation marks for a double back mutation (!!), etc., e.g.
"A15301G!". |
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Coding-region mutations (np 577-16023) are
shown in black; control-region mutations (np 16024-576) in blue. |
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Mutations between brackets () are
recurrent/unstable within the respective clade, or are yet uncertain based on
current data. |
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Mutation motifs in italic are preliminary and are likely to be further refined as
additional sequences become available. |
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The mutations 309.1C(C), 315.1C, AC indels at
515-522, A16182c, A16183c, 16193.1C(C) and C16519T/T16519C were not
considered for phylogenetic reconstruction and are therefore excluded from
the tree. |
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Accession numbers provided at the tips of
branches are representative examples of mtDNA sequences available at GenBank
or from individuals included in HapMap/1000Genomes. |
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It may be convenient to use the Find function
(Ctrl+F) of your browser to search for a particular mutation or haplogroup. |
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Example accessions |
mt-MRCA (RSRS) |
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L1'2'3'4'5'6 |
C146T
C182T
T4312C T10664C C10915T
A11914G G13276A G16230A |
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L2'3'4'5'6 |
C152T A2758G
C2885T G7146A T8468C |
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L2'3'4'6 |
C195T
A247G
A825t T8655C A10688G
C10810T G13105A T13506C
G15301A A16129G
T16187C C16189T |
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L3'4'6 |
G4104A
A7521G |
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L3'4 |
T182C! T3594C
T7256C T13650C T16278C |
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L3 |
A769G
A1018G C16311T |
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N |
G8701A
C9540T G10398A C10873T
A15301G! |
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R |
T12705C
T16223C |
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R0 |
G73A A11719G |
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HV |
T14766C |
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H |
G2706A
T7028C |
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H2 |
G1438A |
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H2a |
G4769A |
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H2a2 |
G750A |
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H2a2a |
G8860A
G15326A |
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H2a2a1 |
G263A |
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rCRS |
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M |
T489C C10400T
T14783C G15043A |
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L3a |
C151T
T152C!
C12816T (A16254G)
A16316G |
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L3a1 |
T721C
C10314T T14461C A14851G
G15553A T16311C! |
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L3a1a |
T151C! C4088T |
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JN655813 |
EF184630 |
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L3a1b |
T195C!
C198T
C2357T C10184T G12618A
G13708A A14566G |
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DQ341081 |
JN655774 |
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G709A |
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JN655803 |
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L3a2 |
C573T A7364G |
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NA19438 |
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L3a2a |
T151C! C3996T
A13887G T16223C |
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JN655805 |
EU092941 |
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L3b'f |
T15944d |
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L3b |
C3450T
G5773A T6221C C9449T
A10086G A13105G! C13914a
A15311G A15824G T16124C C16278T!
T16362C |
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L3b1 |
G10373A |
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L3b1a |
A11002G |
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EU092726 |
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L3b1a1 |
A11800G |
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JQ705783 |
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L3b1a1a |
G15883A |
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DQ304995 |
EU597490 |
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L3b1a2 |
G9300A |
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JN655827 |
EU935449 |
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L3b1a3 |
A13933G
T16311C! |
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FJ460529 |
DQ304990 |
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L3b1a4 |
A1710c
C9605T |
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FJ460536 |
EU092759 |
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L3b1a5 |
T5063C |
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JQ044986 |
EU092962 |
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L3b1a5a |
G5417A |
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NA18865 |
NA18907 |
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T152C! |
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JN655790 |
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L3b1a6 |
A3385G
C5255T G8155A |
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EU092958 |
JQ045058 |
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C16124T! |
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EU092768 |
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L3b1a7 |
A3441G
C5211T A5581G T15299C |
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JX666328 |
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L3b1a7a |
G9477A |
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DQ341073 |
JQ044820 |
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L3b1a8 |
C2332T
G16145A |
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NA19222 |
NA19175 |
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L3b1a9 |
A16051G |
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JN655791 |
JQ045018 |
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L3b1a9a |
A16318G |
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EU092727 |
EU092825 |
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L3b1a10 |
G4659A
G7859A |
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EU092897 |
NA19257 |
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L3b1a11 |
A13790G
T16311C! |
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DQ304991 |
EU092694 |
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L3b1b |
T152C! A9079G
C15664T |
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EU092814 |
DQ112738 |
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L3b1b1 |
T217C |
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EU092682 |
EU200761 |
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L3b2 |
C3420T
T10640C C16527T |
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JQ045029 |
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L3b2a |
T5250C
T16189C! |
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EU092725 |
EU935440 |
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L3b2b |
G9053A
A9067G C15550T |
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NA18916 |
DQ112746 |
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L3b3 |
G185A
A189G
A6527G A9007G C13934T
T14182C G16048A |
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JQ703986 |
NA18858 |
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L3f |
T3396C
T4218C T15514C T16209C |
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L3f1 |
C5601T
T9950C |
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L3f1a |
G3693A
C4350T C5194T A14148G
G15106A |
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EU092891 |
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L3f1a1 |
T3197C
A12507G |
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JN655809 |
DQ341078 |
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L3f1b |
A189G
(A200G) T1822C
C7819a A8527G C8932T
G11440A A14769G T16311C! |
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C16292T |
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DQ341077 |
JN655783 |
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L3f1b1 |
C16295T |
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JQ044831 |
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L3f1b1a |
C8410T
C10070T G16129A! |
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DQ305036 |
JQ704670 |
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L3f1b1a1 |
A272G |
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JX303774 |
EU092857 |
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L3f1b2 |
C7235a |
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EU092805 |
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L3f1b2a |
T16172C
C16266a |
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EU935451 |
EU092953 |
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C150T |
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NA19172 |
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L3f1b3 |
T711C
A6806G A7158G |
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EU092883 |
NA19213 |
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L3f1b4 |
A3505G |
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L3f1b4a |
A13167G
T16292C! |
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EU092865 |
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L3f1b4a1 |
A8799G |
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EU092912 |
EU092791 |
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L3f1b4b |
G15930A |
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JQ045093 |
NA18520 |
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L3f1b4c |
C16218T |
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EU092704 |
JQ045084 |
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L3f1b5 |
A11582G |
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GU455415 |
GU455422 |
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L3f1b6 |
reserved |
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L3f2 |
(745.1T)
T16311C! |
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L3f2a |
T152C! T15479C |
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JN655784 |
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L3f2a1 |
G5821A
C9365T G15314A |
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JN655841 |
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L3f2a1a |
A1842G
C16266T |
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DQ341076 |
JN655819 |
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L3f2b |
374.1A T2442C
C5342T G11016A T12338C
G15466A C15658T |
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EU092770 |
EU092877 |
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L3f3 |
A189G
T318C
C959T G4643A A5181G
C6602T A8158G G8251A
G9932A T10604C T11770C
T15940C C16176T
C16234T |
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FJ625848 |
JN655831 |
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L3f3a |
A16284G |
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FJ625855 |
FJ625854 |
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L3f3b |
C16188T |
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FJ625850 |
DQ341075 |
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L3c'd |
T152C! A13105G! |
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L3c |
T195C!
498.1C
T678C C3582T G4491A
T5393C A7394G T9337C
T9682C A12373G T14221C
T14371C G14560A A14587G
T16311C! T16362C |
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EU092660 |
DQ341074 |
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L3d |
G5147A
A7424G T8618C T13886C
C14284T T16124C |
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DQ112884 |
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L3d1'2'3'4'5'6 |
T921C |
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EU092898 |
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L3d1 |
T6680C |
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L3d1a |
G4048A
C7648T G11887A |
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EU092796 |
NA19316 |
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L3d1a1'2 |
G16319A |
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L3d1a1 |
G1503A |
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L3d1a1a |
C150T A4203G
G5471A T10640C T10915C! |
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JN655800 |
KC911533 |
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L3d1a1a1 |
A3579G |
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KC533458 |
EU092932 |
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L3d1a1b |
T146C!
T195C!
T5162C G9452A C10837T
G12406A A13884G G15106A |
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EU092876 |
NA18867 |
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L3d1a2 |
A15061G |
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HM771228 |
JQ702481 |
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L3d1b |
G5046A |
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JQ045112 |
EU092899 |
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L3d1b1 |
A6272G |
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DQ341072 |
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L3d1b1a |
A8014c |
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JN214459 |
JN214478 |
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L3d1b1b |
C151T
T195C!
A3957G |
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EU200759 |
JN655823 |
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L3d1b2 |
C150T T4553C
T15514C |
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JQ702420 |
JQ705077 |
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L3d1b3 |
T146C! T14634C
G15110A |
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JQ045051 |
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L3d1b3a |
C16256T |
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JX303821 |
JQ044814 |
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L3d1c |
A3203G
T9111C A11239G C12870T
A13542G A16166G |
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EU092762 |
JQ044862 |
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L3d1c1 |
A5372G
A9254G |
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EU092830 |
JQ044824 |
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L3d1d |
A7765G
A9151G (C16256T) (T16368C) |
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AY195782 |
DQ112714 |
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L3d2 |
C14272T
T14584C C16111T |
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L3d2a |
T15115C
(T16189C!) |
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HM771170 |
DQ112713 |
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L3d2b |
T199C |
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JQ705019 |
JN655793 |
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L3d3 |
G1719A
T4688C A15061G |
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L3d3a |
C3498g
G8251A A10899G A11404G
(T16189C)
(C16278T) (T16304C) (T16311C) |
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DQ112716 |
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L3d3a1 |
A15208G |
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JX303864 |
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L3d3a1a |
T2416C |
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EU092851 |
EU597526 |
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L3d3a1b |
G16000A |
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JX303836 |
JX303803 |
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L3d3b |
T7389C |
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JN655797 |
AF381998 |
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L3d4 |
A189G
T195C! |
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NA20296 |
GU455420 |
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L3d4a |
G1393A
A12280G |
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JN655834 |
FJ460540 |
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L3d5 |
A15799G
T16362C |
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JN214479 |
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L3d5a |
A7158G
T12311C G15930A |
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NA19121 |
EU597500 |
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L3d6 |
T5492C
T8473C C8658T G9300A
C15223T |
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JQ045091 |
NA18864 |
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L3e'i'k'x |
C150T A10819G |
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L3e |
T2352C
T14212C |
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L3e1 |
A189G
A200G
T6221C C6587T A14152G
T15670C T15942C C16327T |
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EU092827 |
EU092887 |
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L3e1a |
C16185T |
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L3e1a1 |
G185A C8650T
T16311C! |
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L3e1a1a |
G3438A |
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EU092749 |
KC533483 |
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L3e1a2 |
T152C!
T195C! G207A T5774a A9254G
C11024T G14569A T16209C |
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JX303878 |
EU092867 |
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L3e1a3 |
G10398A |
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L3e1a3a |
C5255T
G7337A |
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KC533488 |
HM771173 |
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L3e1a3b |
G10172A
T12438C T16093C |
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NA19114 |
EU092960 |
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L3e1b |
A14926G
T16325d |
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L3e1b1 |
C16256T |
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JN655794 |
EU092681 |
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L3e1b2 |
G185A
G200A!
A8577G G12192A |
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KC533453 |
JX303759 |
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L3e1c |
A3675G
G5460A
8289.1CCCCCTCTACCCCCTCTA
G8701A G14323A |
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EU092879 |
EU092740 |
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L3e1d |
T152C!
C16176T |
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HM771171 |
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L3e1d1 |
C8703T
G9300A T12738C |
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EU092862 |
JX303847 |
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L3e1d1a |
A9327G |
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EU092693 |
JX303886 |
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L3e1e |
T10370C |
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JQ045096 |
NA19391 |
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L3e1e1 |
T14571a |
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EU092915 |
AF346980 |
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L3e1e2 |
G73A
G90A G97A 106-111d A4562G
T9098C |
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HG01170 |
DQ282507 |
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L3e1f |
8281-8289d |
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JQ704728 |
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L3e1f1 |
T16189C! |
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HM771135 |
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L3e1f1a |
A4395G
C16260T |
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HM771172 |
KC533470 |
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L3e1f2 |
T195C!
G207A
G4219A G7805A |
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JN214448 |
JQ705521 |
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L3e1g |
G1442A
A4844G A5498G T5618C
T8093C T10490C T11318C
T12215C T16172C A16399G |
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JQ044847 |
JQ045070 |
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L3e2 |
T195C! G14905A
C16320T |
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L3e2a |
T4823C
A13105G! G14869A |
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EU092769 |
NA19707 |
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L3e2a1 |
C198T |
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L3e2a1a |
A1737G
C3852T C7196T A15924G |
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DQ305026 |
DQ305027 |
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L3e2a1b |
T6413C |
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DQ305029 |
JQ702533 |
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L3e2a1b1 |
A16399G |
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DQ305031 |
JQ044801 |
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L3e2a1b2 |
A15076G
T16311C! |
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HM771176 |
HM771175 |
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L3e2a1b3 |
A14750G |
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DQ305025 |
HG01456 |
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L3e2a2 |
T10335C |
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JQ045092 |
EU092926 |
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L3e2a3 |
A5102G
T12414C |
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EU092729 |
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L3e2b |
T16172C
T16189C! |
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DQ341071 |
HM771122 |
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L3e2b1 |
A9377G |
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DQ305022 |
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L3e2b1a |
T2483C |
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JQ703138 |
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L3e2b1a1 |
T5580C |
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DQ305021 |
AF347015 |
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L3e2b1a2 |
G3277A
G12406A |
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JX303789 |
JQ701829 |
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L3e2b2 |
G11377A |
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EU092784 |
EU092777 |
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T152C! |
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DQ304998 |
DQ305003 |
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L3e2b3 |
A6932G |
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DQ305008 |
DQ305009 |
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L3e2b4 |
T10861C |
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DQ305000 |
JN381504 |
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L3e2b5 |
G6261A |
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NA19238 |
JQ044972 |
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L3e2b6 |
T146C! C7370T |
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JN655795 |
NA19147 |
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L3e2b7 |
G1927A |
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AF346994 |
EU935465 |
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L3e2b8 |
G9196A |
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DQ305019 |
NA19150 |
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L3e3'4'5 |
G750A |
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L3e3'4 |
G5262A |
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L3e3 |
T195C! C2000T
T6524C G9554A T10667C
A10816G A13101c A16265t |
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L3e3a |
573.XC A10286G
A12397G |
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DQ305012 |
JN655812 |
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L3e3b |
G4655A
A12248G C13197T A13651G
G15812A |
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DQ305011 |
DQ305010 |
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L3e3b1 |
G6261A |
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HM771231 |
DQ305013 |
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L3e3b2 |
C16527T |
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AF346967 |
HM771232 |
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L3e3b3 |
C16465T |
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JQ044850 |
JQ044964 |
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L3e4 |
G3915A
A5584G C11257T C13749T
A16051G |
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EU092752 |
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L3e4a |
C16264T |
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EU092695 |
NA18909 |
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L3e4a1 |
C9490T |
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JQ705320 |
JQ045125 |
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L3e5 |
T398C G8392A
A16041G |
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KF358485 |
JN655822 |
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L3e5a |
G13317A |
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JN214452 |
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L3e5a1 |
A2833G |
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EU092821 |
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L3e5a1a |
C431a |
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KF358475 |
JN655798 |
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L3e5b |
T5483C |
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EU092959 |
KF358486 |
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T195C! |
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JN655828 |
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L3e5c |
A11548G |
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KF358482 |
KF358474 |
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L3e5d |
A8869G
C12591T |
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FJ460533 |
KF358487 |
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L3e5e |
C15367T
A16037G |
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KF358472 |
DQ341070 |
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L3e5f |
T12173C
G15734A A16343G |
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KF358481 |
KF358480 |
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L3i |
T7645C |
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L3i1 |
A10679G
T11260C C13800a G16153A |
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NA19437 |
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L3i1a |
A15758G
(G16129A!)
(T16223C) |
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JN655780 |
DQ112958 |
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L3i1b |
T2158C
C13687T |
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DQ341069 |
EU092923 |
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L3i2 |
T152C!
A189G
A5441G T8222C A14818G
T15388C C16260T
T16311C! |
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DQ341068 |
JN655814 |
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L3k |
T152C!
A235G C494T G3918A T6620g
A8649G T9467C G13135A
C13992T G15314A |
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EU092822 |
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L3k1 |
A735G
T4313C A9007t G9329A
A13542G A13862G C16355T |
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JQ705310 |
JN655789 |
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L3x |
G3483A
5899.XC A6401G T8311C
A8817G G13708A C16169T |
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L3x1 |
T204C G15172A
C16278T! |
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L3x1a |
G5460A |
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L3x1a1 |
A189G
T199C
5899.XCd! |
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NA19446 |
EF556171 |
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L3x1a2 |
T13392C |
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JN655779 |
JN655773 |
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T16311C! |
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JN655837 |
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L3x1b |
C16256T |
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JN655782 |
DQ341067 |
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L3x2 |
(A200G)
A249d C494T A9941G C16193T T16195C |
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L3x2a |
C3435T
T16223C |
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EU092944 |
JN655776 |
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L3x2a1 |
368.1AGAA T6392C
A7129G T16086C |
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DQ341066 |
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L3x2a1a |
A9180G
A13681G A13722G |
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JN655829 |
EU092684 |
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L3x2b |
T650C
A9254G A15758G G15928A
T16243C |
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EU092818 |
HQ675033 |
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L3h |
T7861C
G9575A |
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L3h1 |
G1719A
A4388G C5300T T9509C
A11590G T16311C! |
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L3h1a |
T5492C |
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L3h1a1 |
T8047C
G8485A C12432T G13708A
T13926C T14110C C16192T T16298C |
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JN655830 |
NA19457 |
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L3h1a2 |
C8781a |
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L3h1a2a |
T146C! T4688C
T4742C C8943T T12175C
T12519C A14587G C15646T
A16399G |
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JN655840 |
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L3h1a2a1 |
G12236A
C14862T |
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AF347000 |
JN655824 |
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L3h1a2b |
C16270T |
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JN655788 |
EU092753 |
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L3h1b |
A189c
T195C!
A10044G G14410A C16256a |
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L3h1b1 |
A16284G |
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EU092828 |
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L3h1b1a |
T3777C
C16179T |
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EU092903 |
JN214458 |
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L3h1b2 |
C151T
T152C! T294C A606G T990C
A8842G T9758C C12882T
T13437C G16129A!
T16362C |
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EU092736 |
GU455418 |
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L3h2 |
C150T
T195C! T318C A3879G G5460A
A5813G T5930C G8020A
T9098C G9380A T9965C
G11440A A12469G C13080T
C13755T C16111T
C16184T T16304C |
JN655801 |
DQ341080 |
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